Basal AP3 nt align.nex

#NEXUS 
[MacClade 4.06 registered to Elena Kramer, Harvard University
Harvard University]


BEGIN DATA;
	DIMENSIONS  NTAX=32 NCHAR=681;
	FORMAT DATATYPE=DNA  MISSING=N GAP=-  INTERLEAVE ;
MATRIX

[                    10        20        30        40        50        60]
[                    .         .         .         .         .         .]

MdAP31      GGTGGAATTGTGAAGAAAGCAAGAGAGCTCACGGTTCTCTGTGATGCTGAAGTTTCGCTT   [60]
MdAP32      GGTGGTATTGTGAAGAAAGCAAGAGAGCTTACTGTTCTCTGTGATGCTGAGGTTTCGCTT   [60]
MdAP33      GGTGGTATTGTGAAGAAAGCAAGAGAGCTCTCTGTTCTTTGTGATGCTGAGGTTTCGTTA   [60]
DeAP3       GCAGGGATCATGAAGAAAGCTCGTGAGCTTACTGTTCTTTGCGATGCTGAAGTTTCTCTC   [60]
ScAP3       GCAGGGATTATGAAGAAAGCTCGGGAGCTTACTGTTCTTTGCGATGCCGAAGTCTCTCTC   [60]
TtsAP3      AGTGGGATCTTCAAAAAAGCCAGGGAGCTCACTGTTCTTTGCGATGCCGAGGTCTCCCTC   [60]
SrhAP3      GGTGGGATTTTTAAGAAAGCAAGAGAGCTTACGATTCTTTGTGATGCTGAAGTCTCTCTT   [60]
AeAP31      GGTGGCATTTTTAAGAAAGCGCAAGAGCTTACTGTTCTTTGTGATGCTCAAGTCTCTCTT   [60]
AreAP3      GGTGGGATTTTTAAGAAAGCGAGGGAGCTTACCGTTCTCTGCGATGCCGAGGTCTCGCTC   [60]
AmtAP3      GCTGGGATCACGAAAAAAGCCAAGGAGCTGACGGTGCTTTGCGATGCCGAGGTTTGCCTC   [60]
PhAP3       AATGGGCTCTTCAAGAAAGCTCAAGAACTTACTGTTCTTTGTGATGCACAGATCTCCATC   [60]
HtcAP3      AATGGTCTCTTCAAGAAAGCTGATGAACTTACTGTTCTCTGTGATGCTCAGATCTCCATC   [60]
DrwAP32     GGTGGGATTTTCAAGAAAGCCAGAGAACTTACTGTCCTATGCGATGCCGAGGTCTCTCTC   [60]
DrwAP33     GTTGGGATTTTCAAGAAAGCCCGAGAACTCACTGTCCTATGTGATGCCGAGGTTTCCCTC   [60]
DrwAP34     GGTGGGATTTTCAAGAAAGCCAGGGAACTTACTGTTCTTTGTGATGCTGAGGTTTCTCTT   [60]
DrwAP31     GGTGGGATTTTCAAGAAAGCCAGGGAACTTACTGTTCTTTGTGATGCTGAGGTTTCTCTT   [60]
LneAP32     GGTGGTATTCTCAAGAAAGCTCGAGAACTCACCGTTCTCTGTGATGCTGAGGTTTCTCTC   [60]
LneAP31     GGTGGTATTCTCAAGAAAGCTCGAGAACTCACCGTTCTCTGTGATGCTGAGGTTTCTCTC   [60]
MfAP3       GGTGGGATTATGAAGAAAGCAAAAGAGCTCACCGTTCTCTGCGATGCTCAGGTTTCTCTC   [60]
MpMADS7     GGTGGGATTATGAAGAAAGCAAAAGAGCTCACCGTTCTCTGCGATGCTCAGGTTTCTCTC   [60]
LtAP3       GGTGGGATTATGAAGAAAGCAAAAGAGCTTACCGTTCTCTGCGATGCTGAGGTTTCTCTC   [60]
CfAP31      GGTGGGATACTGAAGAAAGCTCGAGAGATCACTGTTCTCTGTGATGCAGAGGTGTCCCTC   [60]
CfAP32      GGAGGCATTCTCAAGAAAGCTCGAGAGCTCACTGTTCTCTGCGATGCCGAAGTCTCTCTC   [60]
CsAP3       GGTGGGATTCTTAAGAAAGCCAAAGAGCTTAGTGTTCTTTGTGATGCCCAGGTGTCACTG   [60]
TcAP3       CAAGGGATCATGAAGAAGGCCAAGGAGCTCACGGTTCTTTGCGATGCTGAGGTTTCTATC   [60]
HemMADS1    TCAGGTATCATGAAGAAAGCCAAAGAACTCACTGTTCTCTGTGATGCTGACGTGTCAATC   [60]
SmAP3       GCGGGGCTGATCAAGAAGGCCGAGGAGCTCACGGTACTCTGCGACGCGCAGATCAACCTC   [60]
IhAP32      GTGGGGATCTTGAAGAAGGCATGGGAGCTGAGTGTTCTATGTGATGCGCATGTTTCGTTG   [60]
IhAP33      GTTGGGATATTGAAGAAGGCAAGGGAGCTGAGTGTTCTATGTGATGCTGAGGTGTCTCTC   [60]
IhAP31      GGAGGGATCCTTAAAAAAGCAAGAGAGCTCACTGTCCTATGTGATGCCCAGGTATCCTTG   [60]
NymAP3      GCGGGGATCATCAAGAAGGCGAAGGAGCTGACCGTCCTCTGCGACGCTCATGTTTCCCTC   [60]
NymPI       CAGGGCATCCTGAAGAAGGCAAGGGAGATCAGTGTCCTCTGTGACGCTCAGGTCTCACTC   [60]

[                    70        80        90        100       110       120]
[                    .         .         .         .         .         .]

MdAP31      ATCATGTTCTCCACTACTGGAAAACTTTCAGAATACATAAGCCCTTCCACAACAACGAAG   [120]
MdAP32      ATCATGTTCTCCAGTACTGGAAAATTTTCAGAATATATTAGCCCTTCAACATCAACAAAG   [120]
MdAP33      ATCATGTTCTCGAGTACTGGGAAATTATCAGAATATATTAGCCCTTCCACAACAACTAAG   [120]
DeAP3       ATCATGTTTTCCAGTACTGGAAAATTCTCTGAATACATTAGTCCTTCTGCTACAACAAAG   [120]
ScAP3       ATCATGTTCTCCAGTACTGGAAAATTCTCTGAATACATTAGTCCATCTGCTACGACAAAG   [120]
TtsAP3      ATCATGTTCTCCAGTACAGGGAAGCTTTCAGAGTATTGCAGCCCTTCCACAACGACGAAG   [120]
SrhAP3      ATTATGTTCTCAAGCACTGGGAAGTTTTCAGAGTATTGTAGTCCTTCAACCACGACAAAG   [120]
AeAP31      ATTATGTTCTCAAGCACTGGGAAGTATTCAGAGTATTGTAGTCCTTCAACCACGACAAAG   [120]
AreAP3      CTCATGTTCTCCAGCACCGGGAAGCTTTCCGAGTATTGTAGCCCATCCACAACGACAAAG   [120]
AmtAP3      ATCATGTTCTCCGGCACTGGCAAGTTCTCCGAGTATTGCAGCCCTTCCACCACGACGAAG   [120]
PhAP3       ATACTCATCTCAAGTACTAACAGGCTCTATGATTATTGTTCTCCTTCTACCTCGCATAAA   [120]
HtcAP3      ATCATGTTCTCAAGCACTGACAAGCTTCATGAGTACTGTAGCCCTTCTACCACGCACAAA   [120]
DrwAP32     ATCATGTTTTCCACCACTGGCAAATTCTTCGAATATTGCAGCCCTTCTACAACAACAAAG   [120]
DrwAP33     ATCATGTATTCCAGTACTGGAAAATTCTGCGAATTTTGTAGCCCTTCTACAACAACAAAG   [120]
DrwAP34     ATCATGTTTTCAAGCACTGGAAAATTCTGTGAATACTGTAGCCCTTCTACAACAACAAAG   [120]
DrwAP31     ATCATGTTTTCAAGCACTGGAAAATTCTGTGAATACTGTAGCCCTTCTACAACAACAAAG   [120]
LneAP32     ATCATGTTCTCCAGCACTGGAAAGTTCTCTGAGTACTGTAGCCCTACTACTACGACGAAG   [120]
LneAP31     ATCATGTTCTCCAGCACTGGAAAGTTCTCTGAGTACTGTAGCCCTACTACTACGACGAAG   [120]
MfAP3       ATCATGTTTTCCAGCACTGGGAAATTCTCTGAATATTGCAGCCCTTCTACAACCACGAAG   [120]
MpMADS7     ATCATGTTTTCCAGCACTGGGAAATTCTCTGAATATTGCAGCCCTTCTACAACCACGAAG   [120]
LtAP3       ATCATGTTTTCCAGCACTGGGAAATTCTCTGAATATTGCAGCCCTTCTACAACGACGAAG   [120]
CfAP31      ATCATGTTCTCCAGCACCGGCAAGTTCTCTGAGTATTGCAGCCCTCCAACTACCACAAAG   [120]
CfAP32      ATCATGTTCTCCAGCACTGGAAAGTTCTCCGAGTATTGCAGCCCTTCATCTACGGCGAAG   [120]
CsAP3       ATCATGTCTTCCAGCACTGGGAAGTTCTATGAGTATTGCAGCCCTGGTACAAATACTAAG   [120]
TcAP3       ATCATGTTCTCCAGCACTGGCAAGTTCGCCGAGTACTGCAGTCCTTCCACCGATACGAAG   [120]
HemMADS1    ATCATGTTCTCGAGCACCGGCAAGTTCTCCGAGTATTGCAGCCCCGGCACTGACACGAAG   [120]
SmAP3       ATCCTCATCTCCGGCTCGCGAAAGGTGCACCACTACTGCAGCCCTTCCACGGACATCCAC   [120]
IhAP32      ATCATGATCTCTAACTCGGGGAAGCTTTCCGAGTATTGCACTCCTACAACAACAACAAAG   [120]
IhAP33      ATCATGTTCTCAAACAGTGGCAAGCTTTCTGAATATTGCACACCTTCAACAAGTATAAAG   [120]
IhAP31      ATCATGTTCTCAAGCACTGGAAAGTTTTCTGAATACTGTAGCCCTTCAGCAACTACAAAG   [120]
NymAP3      ATCCTCTTTTCCAGCACTCACAAGCTTTTTGAGTACTGCAGTCCTACCACCACGATGAAG   [120]
NymPI       ATCTTGTTCTCTAGTGCTGGCAAGCTGAATGAGTACTGCTCCCCTTCTACCAGCTTGAAG   [120]

[                    130       140       150       160       170       180]
[                    .         .         .         .         .         .]

MdAP31      AAGATTTTCGATCGCTATCAGCATATTTCAGGGACCAATCTCTGGAATTCACACTACAAG   [180]
MdAP32      AAGATATTTGATCGTTATCAGCAGACTTCAGGGATCATTCTTTGGAATTCGCATTACGAG   [180]
MdAP33      AAAATATTCGATCGTTATCAACATATTTCAGGGATCAATCTCTGGAATTCGCATTACGAG   [180]
DeAP3       AGGATGTTCGATCGTTATCAGCAAGTTTCAGGGGTTAATCTTTGGAACTCTCACTATGAG   [180]
ScAP3       AGGATATATGATCGGTACCAACAAGTTTCAGGGACCAATCTCTGGAACTCTCACTATGAG   [180]
TtsAP3      AAAATGTACGACAAGTACCAGGAGGTGTCTCAGATCAACCTGTGGAGCTCTCACTATGAG   [180]
SrhAP3      AAGATATTTGATAGGTACCAGCAAGTTTCTGGAATCAACTTGTGGAGTTCTCACTATGAG   [180]
AeAP31      CAAATATATGATAAGTACCAGGAAGCTTCTGGAATCAACTTGTGGAGTTCTCACTATGAG   [180]
AreAP3      AAAGTATACGACAGATACCAGGAGGTTACTGGGATCAACCTGTGGAGCTCCCACTACGAG   [180]
AmtAP3      AAGACATTCGATCGTTATCAGCAGGTTTCGGGCATCAATCTGTGGGAATCTCACTATGAG   [180]
PhAP3       AAAGTTTACGATCAATACCAAGATGGAAGGAAAGTGGACCTGTGGAAGAAAAGATATGAG   [180]
HtcAP3      CATATATATGATCGCTATCAAAAGTCTGGAAAGGAGGATTTGTGGAGAAGTCACTATGAG   [180]
DrwAP32     AAGATATTCGATCGTTACCAACAAGTTTCTGGGATCAACTTGTGGAACACTCAATATGAG   [180]
DrwAP33     AAGATATTCGATCGTTACCAACAAGTTTCTGGGATCAACTTGTGGAACACTCAATATGAG   [180]
DrwAP34     AAGATTTTCGATCGGTACCAGCAAGTTTCAGGGACCAACTTGTGGAATACTCAATATGAG   [180]
DrwAP31     AAGATTTTCGATCGGTACCAGCAAGTTTCAGGGACCAACTTGTGGAATACTCAATATGAG   [180]
LneAP32     AAGGTGTTTGACCGGTATCAACAAGTCTCCGGAATCAACTTGTGGAATTCCCACTACGAG   [180]
LneAP31     AAGGTGTTTGACCGGTATCAACAAGTCTCCGGAATCAACTTGTGGAATTCCCACTACGAG   [180]
MfAP3       AATATTTTCGATCGTTACCAGCAAGCTTCGGGCACCAGCTTATGGAACTCTCACTACGAG   [180]
MpMADS7     AATATTTTCGATCGTTACCAGCAAGCTTCGGGCATCAGCTTATGGAACTCTCACTACGAG   [180]
LtAP3       AAGATTTTCGATCGTTACCAGCAAGTTTCAGGCAGCAGCTTATGGAACTCTCACTACGAG   [180]
CfAP31      AAGATATTCGACCGTTATCAGCATGTTTCTGGCATCAACTTATGGAACTCCCATTATGAG   [180]
CfAP32      AAGATCTTCGATCGCTATCAACAAGTCTCCGGCATCAACCTTTGGAACTCCCATTACGAG   [180]
CsAP3       AAGATATTCGACCGTTATCAACAAGCTTCAGGTATTAACTTATGGAATTCCCAGTACGAG   [180]
TcAP3       AAGGTTTACGATCGGTACCAGCAAGTGACTGGGATCGACCTGTGGAGTTCGCAGTACGAG   [180]
HemMADS1    ACGGTGTTTGAGAGGTATCAGCAGGCGACGCAGACAAACTTGTGGAGTACACAATATGAG   [180]
SmAP3       ACCGTCATGGATAGGTACCAGCAGCTCACCGACTCCGACCTGTGGCAGCCACAGTATGAG   [180]
IhAP32      TCTATGTTGGATCGGTATCAGGAAGTTTCTGGGATCAATTTATGGAGCTCAAATTATGAG   [180]
IhAP33      TCTATACTTGATCGATATCAGCATATTTCTGGGATCAACTTGTGGAGCTCTCATTATCAG   [180]
IhAP31      AAGATTTTTGATCGATACCAGCATGTTTCAGGCATCAACTTATGGAACTCACACTATCAG   [180]
NymAP3      AAAATGATTGATCGGTATCAGCAGGTAACTGGAACCAATTTGTGGGACTCCCATTACGAG   [180]
NymPI       GAACTTTTAACTCGATACCAGAAGACTTCTGGGAAAAAGCTATGGGATGCTAGGCATGAG   [180]

[                    190       200       210       220       230       240]
[                    .         .         .         .         .         .]

MdAP31      CAAATGCAAGATAACTTGAATAAGCTGAAGGAGATTAATAATAGTCTCCGAAGAGAAATT   [240]
MdAP32      AGTATGCAAGATAACTTGAACAAGCAGAAGGAGATTAATAATAAACTCCGCAGAGAGATT   [240]
MdAP33      CGAATGCAAGATCACTTGAACAAGCAGAAGGAGATTAATAGTAAGCTCCGCAGAGAAATA   [240]
DeAP3       AGGATGCAAGATAACTTGAACAAGCAAAAGGAGATAAATAATAAGCTTCGAAGAGAGATT   [240]
ScAP3       AGTATGCAAAATCACTTAAACAAGCAGAAGGAGATTAATAATAGACTTCGGAGAGAAATT   [240]
TtsAP3      AAAATGCAAGCTCATTTGAACAAGCTGAAGGAGGACAATAGCAACTTGAGGAAGGAAATC   [240]
SrhAP3      AAAATGCAAAATCACTTGAACAAGCTGAAGGATGATAATAACAAGCTGAGAAGGGAAATC   [240]
AeAP31      AAAATGCAAAATCTTTTGAACAAGCTGAATGATGATAATAACAAGCTGAGGAAGGAAATC   [240]
AreAP3      AAAATGCAAAATCATTTGAACAAGTTGAAGGACGAGAACAGCGGTCTCAGGAGGGCAATT   [240]
AmtAP3      AAAATGCAAACTCACTTGATTAAACTGAAAGAGGATAATAGCAGGCTGAGAAGAGAGATC   [240]
PhAP3       AACATGAAACATCAGCTGAATGAGCAAAGTGAGAGGAGCAACAAATTGAAGAAGGAGATA   [240]
HtcAP3      AAAATGAAAAATCAGCTGCACATGCATATGGAGGAAAATGAAAGACTTAGGAAGGAAATT   [240]
DrwAP32     AAAATGCAAGGTCATTTGAGCAAGCTGAAAGAGGTGAACAATAAACTTCGGAAAGAAATT   [240]
DrwAP33     AAAATGCAAGGTAATTTGGACAAACTGAAAGAGAACAACAATAAACTTCGGAAAGAAATT   [240]
DrwAP34     AAAATGCAAAGTATCTTGAAAAAGGTGAAAGAGGACAATAACAAGCTTCGGAAAGAAATT   [240]
DrwAP31     AAAATGCAAAGTAACTTGAAAAAGGTGAAAGAGGACAATAACAAGCTTCGGAAAGAAATT   [240]
LneAP32     AAAATGCAAAATCACCTGAACAAGCTGAAAAACGACAATAACAATTTGAGGAGGGAGATC   [240]
LneAP31     AAAATGCAAAATCACCTGAACAAGCTGAAAGACGACAATAACAATTTGAGGAGGGAGATC   [240]
MfAP3       AGAATGCAAGGCCACTTGATCAAACTCAAAGAGGAAAATAACAATCTCCGGAGGGAAATC   [240]
MpMADS7     AGAATGCAAAGCCACTTGATCAAACTCAAAGAGGAAAATAACAATCTCCGGAGGGAAATC   [240]
LtAP3       AAAATGCAAAGTCACTTGAACAAACTCAAAGAGGATAATAACAGTCTCCGGAGGGCAATC   [240]
CfAP31      AAAATGCAAAATCACTTGAGCAAACTGACAGAGGACAACAATCGACTTCGGAGGGAAATA   [240]
CfAP32      AAAATGCAAAATCACTTGAACAAGCTGAAGGAGGACAACAACAATCTCCGGAGAGAAATC   [240]
CsAP3       AAAATGCAAGAATACTTCGAAAAGCTGAAAGAAACTAACAACAAACTGAGAAAGGAGATT   [240]
TcAP3       AGGATGCAAAATAACCTGAATCATCTGGAGGAGATCAACCGAAATCTTCGAAGGGAAATA   [240]
HemMADS1    AAAATGCAAAACACATTGAATCATCTCAAGGAGATCAACCATAATTTGCGCAAGGAAATT   [240]
SmAP3       GGTATGCAGAAGACCCTGAACCATCTCAAGGAAACAAACAACAACCTCAGGAAGCAGATC   [240]
IhAP32      AAACTGCAAACACAACTGAACAAGCTCAAAGAGGAGAATGAATCACTTCGTAAAGATATC   [240]
IhAP33      AAAATGAAAAGCCACTTGAACAAGCTCCAAGAAGAGAATGAGAGACTTCGTAAAGAAATA   [240]
IhAP31      AAAATGCAAGTGGAGTTAAACAAGCTGAAAGAGGAAAATAATAAGCTTCGGAGGAAAATC   [240]
NymAP3      AGTATGCAAAAGGAATTTAACAAACTCAAGGAGAAGAACGAAAGACTCCGCAAGAGCATC   [240]
NymPI       TATCTGAACACAGAGTTGGACAGGATCAGAAAGGAGAATGAAAATATGCAGATTGAACTC   [240]

[                    250       260       270       280       290       300]
[                    .         .         .         .         .         .]

MdAP31      AGGCAGAGGATCGGTGAAGATCTGAGTGGTCTGAGCATTGAAGAACTGCGCGGTCTTGAG   [300]
MdAP32      CGGCAGAGGATCGGTGAAGATCTAAACGATCTGAGCATTGAAGAGCTGCGCGGTCTTGAG   [300]
MdAP33      AGGCAGAGGATCGGTGAAGATCTGACCGATCTGACCATTGAGGAACTGCGCGGTCTTGAG   [300]
DeAP3       AGGCAGAGAATGGGTGAAGATCTGAACGATCTAAGCATCGAGGAACTGCGCGGTCTTGAG   [300]
ScAP3       AGGCAGAGGATGGGAGAAGATCTGGACGATCTAACCTTTGAGGAACTGCGCGGTCTTGAG   [300]
TtsAP3      AGGCAGAGGATGGGCGAAAATCTGAACGGCCTTCACATGGAGGAACTGCGCGGTCTTGAG   [300]
SrhAP3      AGGCAAAGGATTGGTGAAGATCTGAGTGATCTCGAAATCGAGGAACTGCGCGGTCTTGAG   [300]
AeAP31      AGGCAAAGGATTGGTGAAGATCTGAGTGGTCTGGAAATCGAGGAACTGCGCGGTCTTGAG   [300]
AreAP3      AGGCAGAGAATGGGAGAAGACCTGGATGGCCTGGAGATGGAGGAACTGCGCGGTCTTGAG   [300]
AmtAP3      AGGCAGAGGATTGGTGAAGATTTGGATGACCTGGAACTCGAGCAGCTGCGCGGTCTTGAG   [300]
PhAP3       AGGCAATTCATGGGAGAGGAACTTGATGGACTTAGTTTTGAGCAACTGCATGGTCTTGAG   [300]
HtcAP3      AGGCAATACATGGGTGAAGATCTAAGTGGACTTAGTTTTAATGAACTGCGCGGTCTTGAG   [300]
DrwAP32     AGGCAGAGAATGGGGGAGGACTTGAACGATTTAGAAATCGAAGAAATGCGCGGTCTTGAG   [300]
DrwAP33     AGGCAGAGAATGGGGGAGGAGCTGAACGATTTAGAAATCAAAGAACTGCGCTGTCTTGAG   [300]
DrwAP34     AGGCAGAGGATGGGGGAAGATTTGGATGATTTGAAAATCGAAGAACTGCGTGGTCTTGAG   [300]
DrwAP31     AGGCAGAGGATGGGGGAGGACTTGAACGATTTAGAAATCGAAGAAATGCGCGGTCTTGAG   [300]
LneAP32     AGGCAAAGGATGGGTGAAGATCTGAATGATTTGGATATCGATGAACTGCGCGGTCTTGAG   [300]
LneAP31     AGGCAAAGGATGGGTGAAGATCTGAATGATTTGGATATCGATGAACTGCGCGGTCTTGAG   [300]
MfAP3       AGGCAGAGGATCGGTGAAGATCTGGACGATCTGGAAATCGAAGAACTGCGCGGTCTTGAG   [300]
MpMADS7     AGGCAGAGGATCGGTGAAGATCTGGAGGATCTGGAAATCGAAGAACTGCGCGGTCTTGAG   [300]
LtAP3       AGGCATAGGATCGGTGAAGATCTGGACGATCTGGAAATCGAAGAACTGCGCGGTCTTGAG   [300]
CfAP31      AGACAGAGGATGGGTGAAGATTTGAACGAATTAGAGATCGATGAACTGCGTGGTCTTGAG   [300]
CfAP32      AGGCAGAGGATGGGTGAAGATCTCAATGATTTAGAGATTGATGAACTGCGCGGTCTTGAG   [300]
CsAP3       CGGCAGAGGAGAGGTGAAGATTTGAATGGTTTGAACATCAACGAACTGCGCAGTCTTGAG   [300]
TcAP3       AGGCAAAGGACGGGCGAAGATCTTGACGGCCTTGACATCAAAGAACTGCGTGGTCTTGAG   [300]
HemMADS1    AGGCAGAGGATTGGAGAGGAACTTGATGGCATGGATTTCAAGGAACTGCGCGGTCTTGAG   [300]
SmAP3       AGGCAGCGCATGGGGGAGGATCTGGAAGACCTTAATATGAACGAGCTGCTGGCGCTCGAG   [300]
IhAP32      AGTCATAAGAAAGGGGAAGATTTGATCGATTTGAGCTTCGAGGAGCTGCGTGGTCTTGAG   [300]
IhAP33      AGCCATACAAAGGGTGAGGATTTGGTTGGTTTGAGCTTCAATGAGCTGCGTGGTCTTGAG   [300]
IhAP31      AGGCAAAGAGTGGGTGGAGATTTGGACGGTTTAAATGAGAAGGAGCTGCGTGGTCTTGAG   [300]
NymAP3      AGACAAAGGATTGGGGAGGATCTAGATGAATTAAATCATTCTGAGCTGTGCGGTCTTGAG   [300]
NymPI       AGGCATTTGATGGGTGAAGACCTGAGCTCGTTGTCTGTTGTCGAACTTCGAAATCTTGAA   [300]

[                    310       320       330       340       350       360]
[                    .         .         .         .         .         .]

MdAP31      CAAAATTTGGATAAGGCGGAAAAAATTGTTCGTGAGCGGAAGTATCATGTGATTGCCACT   [360]
MdAP32      CAAAATTTGGACAATTCAGTTAAGCTTGTTCGTGAGCGAAAGTATCACGTGGTCACCACT   [360]
MdAP33      CAAAATTTGGAAAAGTCATGGAACGTTGTTCGTGAGAGAAAGTATCACGTGCTCGCCACT   [360]
DeAP3       CAAAATATGGATAATTCTCTGAAGATTGTTCGTGATCGGAAGTATCACGTGATCACTACT   [360]
ScAP3       CAAAATTTGGATACTTCACTGAAGGTGGTTCGTGATCGGAAGTATCACGTCATCACTACT   [360]
TtsAP3      CAAAACATGGATCTTGCCTTAAAGGTCGTCCGTGAACGCAAGTATCACGTAATCCAAACC   [360]
SrhAP3      CAAAATTTGGAGAGTTCTTTGAAGGTTGTCCGTGATCGAAAGTATCATGTGATCAACACT   [360]
AeAP31      CAAAATTTGGAGAGTTCTTTGAAGGTTGTCCGTGATAAAAAGTATCAAGTGATCAGCAGT   [360]
AreAP3      CAAAATATGGATAATGCCCTGAAGGTTGTTCGGGAACGGAAGTATCATGTGATCCACACA   [360]
AmtAP3      CAAAATATAGAAAGTTCAGTCAAAGCCGTGCGTGAAAGAAAGTATCATGTCATCAGCACT   [360]
PhAP3       CAAAAAGTGGAGAGAGCTTCTAACATCGTTCGTGAGAGGAAGGAAAAAGCAATTTCTACT   [360]
HtcAP3      CAAAATATGGAGAGGGCTTCAAACATCGTTCGCAACAAGAAGAATCATGTGATAACTACT   [360]
DrwAP32     CAAAATTTGGAAAGTTCCCTGAAAGTTGTCCGGGAAAGAAAGTATCACGTGATCAACACT   [360]
DrwAP33     CAAAATTTGGAAAGTTCCCTGAAAGCTGTCCGGGAAAGAAAGTATCACGTGATCATCACT   [360]
DrwAP34     CAAAAATTGGAAAGTTCAGTAAAAGTTGTCCGTGAAAGAAAGTATCACGTGATCAACACT   [360]
DrwAP31     CAAAATTTGGAAAGTTCCCTGAAAGTTGTCCGGGAAAGAAAGTATCACGTGATCAACACT   [360]
LneAP32     CAAAATTTAGACAATTCTTTGAAGATTGTCCGTGAACGAAAGTATCATGTAATCAGCACT   [360]
LneAP31     CAAAATTTAGACAATTCTGTGAAGATTGTCCGTGAACGAAAGTATCATGTAATCAACACT   [360]
MfAP3       CAAAATTTAGAAAGTTCTATCAAAGTTGTTCGAGAAAGAAAGTATCATGTGATCCAGACT   [360]
MpMADS7     CAAAATTTAGAAAGTTCTATCAAAGTAGTTCGTGACAGAAAGTATCATGTGATCACCACT   [360]
LtAP3       CAAAATTTAGAAAGTTCTATCAAAGTTGTTCGCGAAAGAAAGTATCATGTGATCAACACT   [360]
CfAP31      CAAAATTTGAATGATTCCCTGAAAGTTGTTCGGGAAAGAAAGTATCATGTAATCAACACC   [360]
CfAP32      CAAAATTTGGACAACTCCTTGAAGGTTGTTCGTGAAAGGAAGTATCACGTTATCAACACT   [360]
CsAP3       CAAAATTTGGATGATTCTTTGAAGATCATCCGTGAAAGAAAGTACCATGTTATCAAAACT   [360]
TcAP3       CAAAATGTGGATGAGGCTTTGAGGATTGTTCGTCAAAGGAAATATCATGTTATCACCACA   [360]
HemMADS1    CAAAATCTGGATGAAGCTTTGAAGAGTGTTCGCGCTAGGAAATATCATGTGATTACCACT   [360]
SmAP3       AGGGAAATGGACGAGTCCATCACAGTCGTTCGTGACAAAAAATATCACGTTCTCACAACG   [360]
IhAP32      CATAGCATTGAGCAACATCTTAAACTTGTTCAAGAAAAGAAGTTACGCAAGATTGCAACT   [360]
IhAP33      CATAGTATTGACGAGTATCTTAAAGTAGTCAGTGAGAAGAAGATACGAAAGATAGTTACT   [360]
IhAP31      CAAAACTTGGTTGATTGTGCGAAGATTGTTCGCGATAGGAAGTATCATGTGATAAATAAC   [360]
NymAP3      CAAAATCTCAGCGAAGCACTTAAGAAAATCAGATTAACACTTGAGAACAAAATCAAAAGA   [360]
NymPI       GACTCTCTTCAGTTTGGTTATGATCATGTGCGCGTGAAGCAGACCGAATGCCTAAACAAT   [360]

[                    370       380       390       400       410       420]
[                    .         .         .         .         .         .]

MdAP31      CAAAGTGATACTTACAAGAAAAAGATAAGGAACTTGGAGGAAACAAACTCAGGTCTTCTA   [420]
MdAP32      CAATCTGACACTTACAAGAAAAAGATAAGGAACTGGGAGGAAGCAAACTCAAATCTTTTA   [420]
MdAP33      CAAACTGACACTTATAAGAAAAAGGTAAGGAACTTAGAGGAAGCAAACACAAATCTTCTA   [420]
DeAP3       CAGACTGAAACATACCGGAAAAAGTTGAGGAATCTGCATGAAACACACAACAACCTCTTG   [420]
ScAP3       CAGACCGATACAACCAGGAAAAAGATAAGGAGCCTGACTGAAACGCACCATAATCTCCTA   [420]
TtsAP3      CAGTGCGATACTTACAAAAAAAAAATAAGGAACCTGGAGGACACGAACAAGAGATTCATC   [420]
SrhAP3      CAGACAGAAACATACAAGAAAAAGATAAAGAGCCTTCAGCAGTCCCACTTGAATTTAATC   [420]
AeAP31      CAGACAGAAACAAAAAAGAAAAAGGTAAAGAACCTTGAGCAGACCCACAAGAATTTAGGC   [420]
AreAP3      CAGTGCGATACATACCGTAAGAAAATAAGGAACTTAGAGGACACAAACAAAAGGTTCTTG   [420]
AmtAP3      CAAACAGAGACTTACAAAAAGAAGATTAGGAACCTGCATGAAGCACACGCAAATCTAATA   [420]
PhAP3       AAGGTGGATACCCTAAACAAGAAGGTAAAAGGCTATGAAAAACAACATGAAGGATAT---   [417]
HtcAP3      AGAGCAGAAACATCCAGGAAGAAAGTGAGAGCCCTA------CAAAAGGCACAC------   [408]
DrwAP32     CAGACAGATACTTACAAGAAAAAGTTAAGAAGCCTGCATGAAGCACACGGAAATTTATTA   [420]
DrwAP33     CAGACAGAAACTTACAAGAAAAAGTTAAGAAGCGTGCACGAAGCACACGGAAATTTATTA   [420]
DrwAP34     CAGACAGAAACTTACAAGAAAAAGTTAAGAAGCCTGCACGAAGTACACGCAAATTTATTA   [420]
DrwAP31     CAGACAGAAACTTACAAGAAGAAGTTAAAAAGCTCGCACGAAGCACACGGAAATTTATTA   [420]
LneAP32     CGAACAGAAACCTACAAGAAAAAATTAAGGAGCCTCCATGAAGATCATGGAAAGTTAGTG   [420]
LneAP31     CAAACTGATACCTACAAGAAGAAATTAAAGAGCCTCGATGAGCATCATAATGATTTAGTG   [420]
MfAP3       CAAACAGAGACTTACAAGAAAAAGTTGAGAAGCTTGAACGACGAACAGGCAAAATTAATT   [420]
MpMADS7     CAAACAGAGACTTATAAGAAAAAGTTGAGAAGCTTGCGCGATGAACACGCAAAATTAATT   [420]
LtAP3       CAAACAGAGACTTACAAGAAAAAGTTGAGAAACTTGCACGAAGCACACGCAAATTTAATT   [420]
CfAP31      CAAACAGAAACTTACAAGAAAAAGTTAAGGAGTTTGCATGAGATCCATACAAATTTAATC   [420]
CfAP32      CAGACGGAAACTTATAAGAAGAAATTAAGAAGCTTACATGAAGCCCATGCAAATCTACTC   [420]
CsAP3       CAAACAGAAACTTATGGGAAGAAGTTGAAACATCGCCAAGAAGAGCACGAAAAATTGCTG   [420]
TcAP3       CAGACCGATACATATAAAAAGAAGCTGAAGAATTCCCATGAAGCTCACAGGAACCTAATG   [420]
HemMADS1    CAGACTGATACCTACAAGAAAAAGGTGAAGAATTCCCAAGAAGCACACAAGACTTTGCTG   [420]
SmAP3       CGGACGGATACTGCCAAGAAGAAGTGGAAGAACGGACAGCAGAGATATAACAGCCTTGTT   [420]
IhAP32      CAGATTGAAACTTACAAGAAAAAAGTGAGAAGTGCTTTGGAG---CAACATAAGATCCTG   [417]
IhAP33      CAGATCGACACTTGCAAGAAAAAAGTAAGAAGCGCGCTGGAA---CAACATAAGCTTCTG   [417]
IhAP31      GAAAGCGAAACATTTCGGAAGAAGATAAGAAACTTGGAGGAACGACACAAAGAGTTGTTG   [420]
NymAP3      CAAATTGATACTTGTAGGAAAAAGATAAGGTTAGCCGATGACCCTAGAAACAAAGGTTTC   [420]
NymPI       GACATCGAAATTCTGAGGAAAAATGAAAGGATGCTGGAGGAGGAGAATAGGCAGCTGAAA   [420]

[                    430       440       450       460       470       480]
[                    .         .         .         .         .         .]

MdAP31      ---CGCGAATTTGAAGGAAGAGCT------------GGGGATCCACACTAT---GTGTTA   [462]
MdAP32      ---CGTGAATTTGTCAGCCTCGAACGAAGA---GATGTGGATGCACACTAT---GCGTTG   [471]
MdAP33      ---CGTGAATTTGCAGGGGCAGAT------------GGGGATCCACACTAT---GCAATA   [462]
DeAP3       ---CGTGAATTTGAAGGAAGAGATGAA------------GATACTCACTAT---GCACTA   [462]
ScAP3       ---CGTGAATTTGAAGGAAGAGATGAA------------GATCCCCATTAT---GCATTA   [462]
TtsAP3      ---CGCGCTTTGGAAGGGAGAGATGAG---AAT---GGAGAACTGCTTTTC---------   [462]
SrhAP3      ---CACGCTATGGAAGGGAAAGATCATGAGAAC---GGCGAC------TAT---GGTTTA   [465]
AeAP31      ---TGCGCTCTGGCTGGGAAA---GATGCCATC---TGCGCC------TAT---GGTATA   [462]
AreAP3      ---AGAGCACTGGAAGGGAGAGACGAG------AGTGGGGCATTTCTGTAT---------   [462]
AmtAP3      ---CGTCAATTGGAAGGGCTGGCTGAC---AATTCGGGA---------TAT---GGTTTG   [462]
PhAP3       ---CGTCAACTGGAAATGATGGAGGTA------------GAC------TATGGTGGGACC   [456]
HtcAP3      ---AAA---------------GATTTAGCCTATGCTGTGGGACTACTGAAGGCTGAACGT   [450]
DrwAP32     ---GCTGCATTGGAAGGAAGAGATGAG---AAT---GGGGAC------TAC---ATGACA   [462]
DrwAP33     ---GCTTCATTGGAAGGAAGAGATGAG---AAT---GGTGAC------TAC---ATGACA   [462]
DrwAP34     ---CGTGAATTGGATGGAAGAGATGAG---AAT---GAGGAG------TAC---ATGTTA   [462]
DrwAP31     ---GCTGCATTGGACGGAAGAGATGAG---AAT---GGTGAC------TAC---ATGACA   [462]
LneAP32     ---CGATCACTGGAAAGAAAAGATGAT---AAT---GGGGAT------TGT---GCACTA   [462]
LneAP31     ---CGAGCACTGGAAGGAAAAGATGAT---AAT---GGGGAT------TGT---GCATTG   [462]
MfAP3       ---CGTGTATTGGAAGGTCAAGCTGAG---AAT---GGGGCC------TAC---GGCTTG   [462]
MpMADS7     ---CGTCAATTGGAAGGTCAAGCTGAG---AAC---GGGGCC------TAC---GGCTTG   [462]
LtAP3       ---CGTGAATTGGAAGGGCAAGCTGAG---AAC---GGGGGC------TAC---GGCTTG   [462]
CfAP31      ---CATACACTGGAGGGAAGA---GAGGTGAAT---GGACAT------TTT---GGTTTT   [462]
CfAP32      ---CGGGCATTGGAGGAGGGGAATGATGATAAT---GGAGAT------TAT---GGAATG   [465]
CsAP3       ---CATCGACTGGAGGGGATA---GACATGAATCAAGGC---------TAT---GACATG   [462]
TcAP3       ---CGAGAACTGGAGATGAGAGATGAGCAC------------CCAGTTTAC---GGGTTC   [462]
HemMADS1    ---CACGAACTTGAT------GACGCAGTG------------------TAT---GGATAT   [450]
SmAP3       ---CAAGATCTGGTGAAACTTGAAGGAGTCGAG------ATCTTGGATTAT---GCCTGT   [468]
IhAP32      TTAGGAGAAATTGAGGCAATTGAC------------------CCACAATAC---AACTTG   [456]
IhAP33      TTACGCGAAACGGAGACGATCGACCAG------------GACCCGCAATAC---AGCTTG   [462]
IhAP31      ------------AGTGCAATGGAAGGA---AAT------CCTCCGAGTTAC---CTGTTT   [456]
NymAP3      ---AGGGAGTTA------CAAGAAGAAATCAAT---------------TGT---AGT---   [450]
NymPI       TATATACTGCATCAACAGGAACAAATGGCAATGCGCGAGCTGGGAGACATC---GACATT   [477]

[                    490       500       510       520       530       540]
[                    .         .         .         .         .         .]

MdAP31      GGTGGCAATGATGGG---GACTATGAAGCT------GCGCTTGGGCTTGCAAATGGGGGA   [513]
MdAP32      GCAGGCAATGATGGG---GACTATGAAGCT------GCACTTGGGCTAGCGAATGGGGCT   [522]
MdAP33      GTAGGCAATGATGGG---GACCATGAAGCT------GCACTTGGGTTGGCTAATGGGGGC   [513]
DeAP3       GCA---AATGAAGGG---GACTATGAAACT------GCCCTTGAAATGGCGAATGGGGGA   [510]
ScAP3       GCC---AATCAAGAGGAGGACTATGAAGCT------GTGCTTGAATTGGCGAATGGTGGC   [513]
TtsAP3      GCCGATGGCAGTGGGCTGGACTACGAATCT------GCCCTCGCATTGAGCAGTGGAGGG   [516]
SrhAP3      GCTGATAACAGTGGTCCTGATTTCGAATCT------GCGCTTGGATTGGCGAATGGCGCG   [519]
AeAP31      GCTTATAATGAAACTCTTGATTACAAATCT------GTGCTTGGATTGGCGAATGACGCG   [516]
AreAP3      GCCGATTCCAGCAGGCCCGACTGTGAATCA------GCCTTCGGATTGGCTAATGGAGCC   [516]
AmtAP3      GTGGAT---GATGGAGCAGACTATGAAGCT------GTACTTGCTTTGGCTAATGGCACC   [513]
PhAP3       CAATACAAGGGCATCCCAATGTGTGGGCCC------CACTTCTTGGGGTACAATATGCAG   [510]
HtcAP3      GAAAACTATGGTGGGCCCGACTGTAGATAT------GTCGTGGGATCTACCAACATCGGG   [504]
DrwAP32     GGCGATAATGGAGGGCCAGATTATGAACCG------GGGATTGGAATGGCGAATGGGGGT   [516]
DrwAP33     GGTGATAATGGAGGACCAGATTATGAACCG------GCGATTGGAATGGCGAATGAGGGT   [516]
DrwAP34     GGCGAAACCAGAGGACCTGATTATGAATCG------GCTATTGGAATGGCGAATGGTGGG   [516]
DrwAP31     GGCGATAATGGAGGATCAGATTATGAACCG------GGGATTGGAATGGCTAATGGGGGT   [516]
LneAP32     GGCGATAATGGTGGACCAGACTATGAAACT------GCACTTGGCTGGGTAAATGGTGGG   [516]
LneAP31     GTCGATAATGGTGGACCAGACTATGAAACT------GCACTTGGCTGGGCAAATGGTGGG   [516]
MfAP3       GTCGATAATGGTGGGCCAGACTACGAATCT------GCGCTTGTGTTGGCAAATGGTGGG   [516]
MpMADS7     GTCGATAATGGTGGGCCGGACTACGAATCT------GCACTTGTGTTGGCAAATGGTGGG   [516]
LtAP3       GTCGATAATGGTGGGCCAGACTATGAATCT------GCCCTTGTGTTGGCAAATGGTGGG   [516]
CfAP31      TCCGGCAACGACGCCCCACACTATGGAGCT------GTCATCAATTTGGCTCATGGTGGC   [516]
CfAP32      GGAAATAATGGTGGAGCAGACTATCAAGCA---GCTGCATTTGGTTGGGCAAATGAGGGC   [522]
CsAP3       CTCGATCGCGAAGGC---GACTACGAAACG------GCATTTGGTCTGGCGAACGGTGGT   [513]
TcAP3       GTCGACAATGATCCTACTAACTACGACAGC------GCTCTGGCACTGGCAAATGCTGGG   [516]
HemMADS1    GCGGATGAGGACCCAGGCAACTATGATAGT------TCACTTGCTCTTGCTCATGGTGGG   [504]
SmAP3       GCCAGCATTGAAGCAAGCGATTATAAGCCGCCGATAGCAATGAGCATCGCAAGCCGACCT   [528]
IhAP32      TGCGACGGTGAA---ACCGACTATGAACCG------GCTCTTGGCTCAGGAAATGGAAGC   [507]
IhAP33      TATGACAGCGAA---ACCGACTTCGAACCC------GCGCTCGGTTTGGGAAATGGTCAC   [513]
IhAP31      GAAGACAATGGG---ACAGAGTTAGCAGGA------GATTTTGGCAGCAGGAACTCATCG   [507]
NymAP3      ---GATGGAAGTGAAGATAATTATGAATCC------ATGGTGGTTATAAGAAATAGTGAT   [501]
NymPI       GGAAGCAACAAAGGAAAAAGTTATCCTTCA---------------------CAATCCAGG   [516]

[                    550       560       570       580       590       600]
[                    .         .         .         .         .         .]

MdAP31      TCTCATATC---TTTGCCTTCCGCCTGCAACCAACCCAGCCCAAT------CTTCAGGAC   [564]
MdAP32      TCTCATGTC---TTTGCCTTCCGCTTGCAACCAAGCCAGCCTAAT------CTTCAAGAT   [573]
MdAP33      TCCCATTTC---TTTGCTTTCCGCCTGCAACCAAGCCAGCCCAAT------CTTCAGGAT   [564]
DeAP3       CAAAACATA---TTTGCTTTTCGCCTGCAACCAAGCCAGCCCAAT------CTACATGAT   [561]
ScAP3       CCAAACATA---TTTGCCTTTCGCTTGCAACCAAGCCAGCCCAAT------CTTCACGAT   [564]
TtsAP3      GCTAACTTA---TTCGCATTTCGGCTGCAACCATTCCAGCCCAAT------CTCCATGAT   [567]
SrhAP3      TCCCACATA---TTCGCATTTCGCGTCCAACCATGCCAGCCTAAT------CTCCACGAC   [570]
AeAP31      TCCCACATA---TTTGCATTTCGGATACAACCATGCCAGCCTAAT------CTCCACAAC   [567]
AreAP3      CCCCATATG---TTTGGATTCCGGCTGCAACCATGCCAACCTAAC------TTGCAGGAT   [567]
AmtAP3      CACAATCTT---------------------------------------------CACGAT   [528]
PhAP3       GGAAATCCT---TACCATGAGTCAGCTCACTCTGATGTTACCACAGCCAACAACATTTCT   [567]
HtcAP3      TCCCACATT---TTTGCA---------TGCCCTTATCAGCCAAAT------CTCCATGAT   [546]
DrwAP32     TCCCACATA---TTTGCATTCCGCATGCAACCATACCAACCGAAT------CTTCATGAT   [567]
DrwAP33     TCCCACATA---TTTGCATTCCGTGTGCAACCATTCCAGCCGAAT------CTTCATGAT   [567]
DrwAP34     TCCCACATA---TTTGCCTTCCACGTGCAACCGTGCCAGCCAAAT------CTTCAGGAT   [567]
DrwAP31     TCCCACATA---TTTGCCTTTCGTGTGCAACCATACCAGCCGAAT------CTTCATGAT   [567]
LneAP32     TCTCAAATG---TTTGCTTTCTGCATCCAACCATGCCATCCAAAC------CTGCAAGAA   [567]
LneAP31     TCTCAAATG---TTTGCTTTCTGCATCCAACCATGCCAGCCGAAC------CTGCAAGAC   [567]
MfAP3       GCCCATATT------------------------------------------CTTCACGAC   [534]
MpMADS7     GTCCATAGT------------------------------------------CTTCACGAC   [534]
LtAP3       GCTCACAGA------------------------------------------CTTCACAAC   [534]
CfAP31      AATCACGAT------------------------------------------CTTCACGAA   [534]
CfAP32      TCCCAAATG---TTTGCTTTGTGCGTGCAGCCATGCCACCCAAAC------CTTCAAGAC   [573]
CsAP3       GGCCATGTA---TTTGCATTTCGCCTCCAGCCCATCCAGCCAAAT------CTCCATGAC   [564]
TcAP3       TCTCATGTC---TACGCGTACCGTGTACAGCCAAGCCAGCCAAAT------CTCCATGGA   [567]
HemMADS1    TCCAACATG---TATGCCTACCGAGTTCAGCCAAGCCAGCCAAAC------CTCCATGGC   [555]
SmAP3       GCTGATGTGGGCTATGCCTTCCATCATACTGCAGGCCAGTCAAAC------GTCCATGAT   [582]
IhAP32      TCCCAGCTC---GTAGAATTTCATATGCAAGATACCAACCAGATA------TACGATGAC   [558]
IhAP33      CAACAGCTG---GAGTACTATCATCTGCAGCCAAACAACCATCAA------GCAGAGGTT   [564]
IhAP31      TCCTTAATG---TTCGCTTTTCGTGTGCAACCAAGTCAACCAAAT------CTCCACGAC   [558]
NymAP3      GCACAGCCA---TGCCCAGTACGCGTGCAATCCAGCCATCCTAAT------CTGCATGAA   [552]
NymPI       GTGCAGCCA---TTTGGGTTTTGTGTGCAACCTATACAGCCTAAC------TTGCAGCAG   [567]

[                    610       620       630       640       650       660]
[                    .         .         .         .         .         .]

MdAP31      AGTGGAGCG------TATGGCTTGCAGGATCTTCGCCTTGCTTGA---------------   [603]
MdAP32      GGTGGGGCC------TATGGCATGCGGGATCTCCGCCTTGCTTGA---------------   [612]
MdAP33      GGAGTG---------TATGGCTTGCAGGATCTTCGCCTCGCTTGA---------------   [600]
DeAP3       GGAGGGGGA------TATGGCTCTCATGATCTGCGACTTGCTTGA---------------   [600]
ScAP3       GGA------------TACAGCTCTAACGATCTACGCCTTGCTTGA---------------   [597]
TtsAP3      GATGCTGGA------TATGGGACCCAGGATCTGCGCCTAGCATAA---------------   [606]
SrhAP3      ---GCAGGA------TATGGGACCCATGATCTGCGCCTTGCTTAA---------------   [606]
AeAP31      GCAGGA---------TATGGGATCCACGATCTGCGCCTTGCATAA---------------   [603]
AreAP3      ---GCTGGG------TATGGAACCCATGATCTGCGCCTCGCATAG---------------   [603]
AmtAP3      ---GCTGGG------TTTGGCATCCACGATCTTCGCCTTGCATGA---------------   [564]
PhAP3       TCTGCC---------TACGGAATTTATGATCTTCGCCTTGCATGA---------------   [603]
HtcAP3      GCTTCA---------TATGGGATACCTGATCTACGTTTTGGTTAA---------------   [582]
DrwAP32     CCAAGT---------TACGGCATCCATGACCTGCACCTTGCATAA---------------   [603]
DrwAP33     CCAAGT---------TACGGCATCCACGACTTGCACCTTGCATAA---------------   [603]
DrwAP34     AATGGC---------TATGGCTGCCATGAGCTGCGCCTTGCGTAA---------------   [603]
DrwAP31     CCAAGT---------TATGGCATCCATGACCGCATAAGATCTTGA---------------   [603]
LneAP32     ACTAGA---------TATGGTTCCCACGATCTCCGTCTCTCAGGTGGTAGTAGCACTGTA   [618]
LneAP31     ACTAGA---------TATGGTTCCCACAATCTACGTCTTGCATAA---------------   [603]
MfAP3       ACGGGA---------TTCGGCATCCATGATCTTCGCCTTGCATAA---------------   [570]
MpMADS7     ACAGGA---------TTTGGCATCCATGATCTTCGCCTTGCATAA---------------   [570]
LtAP3       ACGGGA---------TTTGGTATCCATGATCTCCGCCTCGCATAA---------------   [570]
CfAP31      ATTGCG---------TATGGCTCCAACGATCTACGCCTCGCATAA---------------   [570]
CfAP32      GCCAGG---------TCCGGCCACCACGATCTCCGCCTTGCATGA---------------   [609]
CsAP3       AATGGC---------TATGGTACCCATTAGCTGCGCCTTGGATAA---------------   [600]
TcAP3       ATAGGC---------TACAGTTCTCATGACCTTCGCCTGGCATGA---------------   [603]
HemMADS1    ATGAGC---------TATGGGCCACATGATCTTCGTCTTGCATGA---------------   [591]
SmAP3       GTAGGC---------TATGGATTCCATGAGTTGCGGCTCGCATGA---------------   [618]
IhAP32      ACGGGG---------TTCGATTTTCATGATTTAAGGCTTGTGTAA---------------   [594]
IhAP33      GGTGATGATATAGGTTACAACTTTCATGATTTACGCCTTGGCTAA---------------   [609]
IhAP31      GTCGTT---------TATAGCACCCACGAGTTACGTCTTGGCTAA---------------   [594]
NymAP3      AGAGGA---------TATGGGTGCCACGATTTAATTCTAGGATGA---------------   [588]
NymPI       AACAAATAG---------------------------------------------------   [576]

[                    670       680]
[                    .         . ]

MdAP31      ---------------------   [603]
MdAP32      ---------------------   [612]
MdAP33      ---------------------   [600]
DeAP3       ---------------------   [600]
ScAP3       ---------------------   [597]
TtsAP3      ---------------------   [606]
SrhAP3      ---------------------   [606]
AeAP31      ---------------------   [603]
AreAP3      ---------------------   [603]
AmtAP3      ---------------------   [564]
PhAP3       ---------------------   [603]
HtcAP3      ---------------------   [582]
DrwAP32     ---------------------   [603]
DrwAP33     ---------------------   [603]
DrwAP34     ---------------------   [603]
DrwAP31     ---------------------   [603]
LneAP32     ACTCAGCTCCAACCTTTATAA   [639]
LneAP31     ---------------------   [603]
MfAP3       ---------------------   [570]
MpMADS7     ---------------------   [570]
LtAP3       ---------------------   [570]
CfAP31      ---------------------   [570]
CfAP32      ---------------------   [609]
CsAP3       ---------------------   [600]
TcAP3       ---------------------   [603]
HemMADS1    ---------------------   [591]
SmAP3       ---------------------   [618]
IhAP32      ---------------------   [594]
IhAP33      ---------------------   [609]
IhAP31      ---------------------   [594]
NymAP3      ---------------------   [588]
NymPI       ---------------------   [576]
;
END;


BEGIN CODONS;
	CODONPOSSET * CodonPositions = 
		1: 1-679\3, 
		2: 2-680\3, 
		3: 3-681\3 681;
	CODESET  * UNTITLED = Universal: all ;
END;


BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
END;


BEGIN TREES; 

	TRANSLATE
		1	MdAP31,
		2	MdAP32,
		3	MdAP33,
		4	DeAP3,
		5	ScAP3,
		6	TtsAP3,
		7	SrhAP3,
		8	AeAP31,
		9	AreAP3,
		10	AmtAP3,
		11	PhAP3,
		12	HtcAP3,
		13	DrwAP32,
		14	DrwAP33,
		15	DrwAP34,
		16	DrwAP31,
		17	LneAP32,
		18	LneAP31,
		19	MfAP3,
		20	MpMADS7,
		21	LtAP3,
		22	CfAP31,
		23	CfAP32,
		24	CsAP3,
		25	TcAP3,
		26	HemMADS1,
		27	SmAP3,
		28	IhAP32,
		29	IhAP33,
		30	IhAP31,
		31	NymAP3,
		32	NymPI
	;
	TREE  * UNTITLED =  [&R] (((((((((1,2),3),(4,5)),((((6,9),(7,((11,12),8))),((10,((19,20),21)),((13,14),16))),(((17,18),23),22))),(24,((25,26),27))),30),(28,29)),31),32);

END;


BEGIN MacClade;
	Version 4.0  84;
	LastModified -1078350979;
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